You could use next script to migrate (it will be included in upcoming version). It is quite easy so I think will understand how to fill this field. The field 'hash' used to manage subscriptions from e-mails.
1. Alter table and add new field
ALTER TABLE `jos_jcomments_subscriptions` ADD `source` VARCHAR(255) NOT NULL DEFAULT '';
ALTER TABLE `jos_jcomments_subscriptions` ADD INDEX `idx_source`(`source`);
2. Import comments subscriptions
INSERT INTO jos_jcomments_subscriptions (`object_id`, `object_group`, `lang`, `userid`, `name`, `email`, `hash`, `published`, `source`)"
SELECT DISTINCT contentid
, CASE WHEN component = '' THEN 'com_content' ELSE component END
, 'en-GB'
, userid
, name
, email
, md5(concat(contentid,CASE WHEN component = '' THEN 'com_content' ELSE component END,userid,email,'en-GB'))
, 1
, 'joomlacomment'
FROM #__comment c
WHERE `notify` = 1
AND NOT EXISTS
(
SELECT * FROM #__jcomments_subscriptions s
WHERE s.object_id = c.contentid
AND s.object_group = CASE WHEN c.component = '' THEN 'com_content' ELSE c.component END
AND s.userid = c.userid
AND s.email = c.email
);